Scaffold Ga0214232_100321

Overview

Basic Information

• Taxon OID: 3300020679
• Scaffold ID: Ga0214232_100321
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6455
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F017967	Metagenome	237	Y
F021910	Metagenome	216	Y
F028086	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214232_10032110	F002539	GGAG	MNEHIWTASGTDITLRWRKAGWVPPSEIQSYKDKWKYFQELPLRSLDAQGKIEYEGTLKLNKIFRIK
Ga0214232_10032112	F017967	GGA	MGIEYYLKAAVSEYVDKDGATKKRYATIGIVTRTKKNDLMAKIEMLPLLGMKEGAFWCYLNVPEDKPTQTATQATAPDLNDIESDIPF
Ga0214232_10032118	F021910	AGGAGG	MGMNRADAYYEPDDYDDRSDEIEERTWQLLKVGGKFDYRTSEAISEALSEMGVDDSQALQDVIDSGDYEQLGRKLISMACEYMEGHAKEVAEFEIND
Ga0214232_1003217	F028086	AGGAG	MVNESIPFAGNVKVPSDDCEETFFAVYPDFFYEGSTALNLWTQAWQAALDHVENKKPLIQLI