Scaffold Ga0214232_100175

Overview

Basic Information

• Taxon OID: 3300020679
• Scaffold ID: Ga0214232_100175
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12542
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009319	Metagenome	319	Y
F021910	Metagenome	216	Y
F024029	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214232_10017515	F009319	AGG	MIESLVKPSPLDNDVAVMKILQLMGQISLRDLEYVLKVVAAVYKKVS
Ga0214232_10017520	F024029	GGAGG	MNDHIWTAAGTDIEERWKAKYGWVRPSEQPEYQAKFKYYQELPLRKLDDEAKVQYEAVLRKAKVARVR
Ga0214232_1001759	F021910	GGGGG	MGMSRHDAYYEPDNYDDRTDEIEERTWELLKVGGKFDYRTTSAIAEMLSELGVDDSKAIQDVIDSGDYEALGRKLISMSCDYHERYAREIAEFEIYD