NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_102181

Scaffold Ga0214169_102181


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_102181 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F080871Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1021811F015585N/AIKYRFVKLKEIRMSQKNTESNQRLIKVINHCSRIAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKRNSEVQGKPPSEVKAEPGLSEEEKFFSSPW
Ga0214169_1021812F016361N/AMCKKRELTEESLIIDGVNRPIGERSIQTLMSKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELRNMNAMCTC
Ga0214169_1021813F080871N/AMSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKLIETIRDIDPDWHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
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