NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_100423

Scaffold Ga0214169_100423


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_100423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3437
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032253Metagenome / Metatranscriptome180N
F048095Metagenome / Metatranscriptome148N
F091311Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1004231F048095N/AMSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFVLKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASP
Ga0214169_1004232F091311N/AMVNNKTTIKENREITEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKNRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVPI
Ga0214169_1004235F032253N/AMSQATETMNNDPRVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPIAEQAQAKTAEMILQYESALLQNETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR
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