Scaffold Ga0194126_10115915

Overview

Basic Information

• Taxon OID: 3300020603
• Scaffold ID: Ga0194126_10115915
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051875	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194126_101159151	F051875	N/A	LKIYYRCINMSSTMSTLEEVANQFQVWRDNKKNSKFSPVPPHLKTNARQLLSSYPISQVAVALGISRSFLYNIQKDQNYSPDSKNQQTSGTESLNFIPFNFADPADPNQPQKNQLINPAPPLNFTCEMIKPNGIRLIIHTSDPTSIINTFLCSN