Scaffold Ga0181557_1200405

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181557_1200405

Scaffold Ga0181557_1200405

Overview

Basic Information
Taxon OID	3300020601 Open in IMG/M
Scaffold ID	Ga0181557_1200405 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011506CT metaG (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	746
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039108	Metagenome	164	N
F052560	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181557_12004053	F039108	GAG	MDEEIECPECGGWGWLVYWVGKRGANDPCGSEVQDDCDVCHGSGMIENPDWSGN
Ga0181557_12004054	F052560	N/A	CWGSDMVKDAIGMLVLTALVIALGTNFVTETHNIWALMSRYG

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