Scaffold Ga0211540_1000808

Overview

Basic Information

• Taxon OID: 3300020584
• Scaffold ID: Ga0211540_1000808
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555983-ERR599011)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6273
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030401	Metagenome	185	Y
F072256	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211540_100080814	F072256	N/A	MKNNNQKLIVQDPFVEFYPEPHKYYDLKRKCYVARSVSDVIKTTDYVSKNMEKAAMRGTKIHAAVQIWCETGDIPLSLAYAEEYAEWVKHLINYRMWETWKPLVNELRMIDRKRDIAGSVDTILQHKKTGMLCLADYKTQEKYSKKNHSLQIGGYVSLFYQNYPNLSLFSCRIIYITPDGIKTQEYNPAECMFDYEQARKLYFESN
Ga0211540_100080815	F030401	GGAGG	VEALFAGSAVRTLRKMVKKGLITEKDLDTPPDGYFISMGYERELGTGKWIRIKRTLRGALPSLPVHKLPKYRNLLTNKITFDPVMYEKQ