Scaffold Ga0210401_10220508

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10220508
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000154	Metagenome / Metatranscriptome	1891	Y
F000156	Metagenome / Metatranscriptome	1877	Y
F041337	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_102205082	F041337	GGAGG	VAQEYGPGEIVPQSGICTITHDPQHADMPHEVTVIKGRRFPTCRHCKGPTFELAHAAKHVLEIDHLEEAHAPAG
Ga0210401_102205083	F000156	AGGAGG	MARRTPPRKVRYFAPVAPRLARNTVIESTFEVGRRFRCTMRVDCGQLDPGMVIRPDPGEWHPRMSERLDEQELADWRAGRDAVYQLAALTVSARLAVADG
Ga0210401_102205084	F000154	N/A	MPETQIAQAVQLLDLMLEHFADDGHWTRGRYDDGNGGHCLVGALLHLSREHRLPRAPAIALLQDAMPRPGLPLVHFNDTCCGSAAELRSIILKARRLADDHAEQDRAASAAKAWLLARIGNKRRPPSTDIVDTAPNKPFVPERLAA