Scaffold Ga0210401_10149538

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10149538
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2183
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F005889	Metagenome / Metatranscriptome	387	Y
F069092	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_101495383	F069092	AGGAG	MGYPLSVSTVEQKILAALARIESKLDDTERRVKAIQQDVNRVKRIVRG
Ga0210401_101495385	F005889	AGGAGG	MSDAGGVAVIAGNRFENSAHGLDPIDRKDRAKRYLRRIVALTGAMQMDGVYVLDVGKARFHVRDRYVGRQRDMTDSECAYEETCFYPVHKGMPKTEEIATALLQLTNNPALFDKWAVQNGLAIKADGQVFTRAQ
Ga0210401_101495386	F000217	AGGAG	MKSKILAFSSDGDSTLLEYDPATADMEEVNEVIAEYEAKTGAQPFDMATGERIEKVTREQSEVLMVHPIAGG