Scaffold Ga0210401_10060196

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10060196
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3578
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036809	Metagenome	169	Y
F044611	Metagenome	154	Y
F077551	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_100601961	F044611	N/A	SETSSSTEVYEQIFAGVRDRRDVVHAIARAVRQLRAAMEKEDNSAVTAAHVRNLKEIDPQALATAYAMAERTCTYWPTPGQIREFAGWSDEMRSRLQLQWVFQYLEKHGPEGRPRGGGVRFGEDETGRRVLLEIDEVVPAPEIPAEIEKVLAALGSGSAKQGLRYVSQHPIAKGWDGFHGDAASRAAERIEAQWIRCSLHTLRTGRNDESTTRG
Ga0210401_100601963	F077551	AGGAGG	MAEEVSPSEFLISKMEGMDDVIQVLIVTRTEEGEISYDSCGQVAADTLGMIEFVKVAAAEHLRRELYNEDLD
Ga0210401_100601965	F036809	AGGCGG	MTVQVCILNEEDARSFTCGGIAHKCRSRRHHHYGKNQVAALVKEGELVWLGKHKKAATFRNARSWIKTYTRNEFGEVISCGMQLVRGGGGY