NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10090725

Scaffold Ga0210395_10090725


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10090725 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2256
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008431Metagenome / Metatranscriptome333Y
F064903Metagenome / Metatranscriptome128N
F066496Metagenome / Metatranscriptome126N
F090320Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100907251F066496AGGAGMSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKVFSLSR
Ga0210395_100907252F008431GAGGMTTRRRRDRQDSEKSGEERFFLAGGSRNGDVPALGRECTSEAEAIINAFREKVSFYRVSEFQTRADVGRSGEPILRKDGLKKNNPAS
Ga0210395_100907253F064903GAGGMRSLFPSNYDRADVLMSAGCSTFVSAALILVIPRVGVLLLEILFGLFFIGCALMARARARRRMLGKEGPKKSCDTKAKWFDRYDVLMILAVVVVQTAAGGLLRKAGWSEGTVSILPLIMFAAGILLKPRVVEFVERRRKTHPADADCRSTAAQPENLDPTDRALGPE
Ga0210395_100907254F090320GGAGMIDPKTNQNRENSGFWTLSKFGGLDQLDWLMILVSVLIGTIAKQHHFLQLPDGFLEWVFPFLLMMAGYKARGKITEIIKVRRAKTRKAPDE
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