Scaffold Ga0210395_10015242

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10015242
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5671
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004969	Metagenome / Metatranscriptome	417	Y
F044641	Metagenome / Metatranscriptome	154	Y
F058377	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_100152422	F058377	AGGAG	MNFYRSQAIDYSDLLQEAAARTGFSASEMQELLESDLNIDHLLDYITAVVSNQMN
Ga0210395_100152423	F044641	N/A	MSRWNVKASTLVILSCLVFIMLLIVVLPDVDLPDTAFHQGTAPLVVHARATTAPPVVAVAALFQFPKIVRFWRPDREDVFFAHLDPNFRPILFRSIRR
Ga0210395_100152427	F004969	AGGAG	MNLGSHSFRTLLLAGVLAASLAGIACEHHSYRVYDPYYTDYHVWNNDEVVYYQRWADETHRDRGRDFRKLRPEEQKEYWTWRHNHGDHDRDDRDRGHR