NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10010651

Scaffold Ga0210395_10010651


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10010651 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6841
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006278Metagenome / Metatranscriptome377Y
F006399Metagenome / Metatranscriptome374Y
F010114Metagenome / Metatranscriptome308Y
F017708Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1001065110F017708AGGAGMAKVIEFHIPKNFRKPLRTAAQPQLGKIIEFCPQTKRSA
Ga0210395_100106513F006399AGGMATSVLNPRLQSLVNEYGVFWQLWPQFEQTHGERRVVGFELELIGSHTSDLNHVDPDCPTCRHVRSVLLAIADLMPGELTFSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYFFLNRENGQSFETDLLNEVKTFLNRWGIHQR
Ga0210395_100106514F006278GAGGMFRAEIQWLASGPTLKLERKLVADWAEQARCLITKDVLPKGLIVDLTEVSYIDSAGEQLLKWLASVGALFDAGSVYAIAVCDRLRLSPMQRISERRKRRHGNNEERSSIRHSHPVEAI
Ga0210395_100106515F001596AGGAGMSWFHLSTVAVDARNYASPAEIVACFQDQRNVLGRLAFLITGDQATADQAVVKACEMTFQRNSPFRDWLFEWAKAATIASAISHGTKAIRICEATYKDRRCPHVEHLSQGDAEERASSLDLILAADAPKLIAELDPLCRAVLVLRVAIRSSIQDCALRLTVSRAAVLGANYHAMTWLHDGHVKTLAENRDASHAV
Ga0210395_100106516F010114GAGGMIIELNDDDTRLLYAVLLQQAQEHWSYATTSEVAERLCKLATRFARPVRELPT
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