NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10002249

Scaffold Ga0210395_10002249


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10002249 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15044
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002437Metagenome / Metatranscriptome559Y
F011862Metagenome / Metatranscriptome286Y
F013206Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000224911F011862AGGAGMSARNSRAFLLMLTTFVVSAAATEVHAGAKIGLEQSRDSIIRIVTQIQRADYEGDRPALKRLHDELAPIPEDSKLASRVLYWRGFALWRGAINGFNETPTPIDLEADLTQAVTDFNAAIARDPTWVEPKMGAGSSLGYLMYLNKKDPTRVQELLQQSSALLKEAMATAPDNPRLLWVLGPIRWSSPPERGGGQDKAIEGYNKGLEVMRDHKRDVADPLEPSWGEPELLMSLAWSNLNRTAPDLKAAEQYAEAALKLVPYWHYVRDILMPQIRAAQAKALHSGRIVGNSEVMA
Ga0210395_1000224914F013206AGGAGMIEDRELDAWREQWSSVAEPSADFQRDFQRKVQQRIKREERRFVLGNILTVIAFIAILIFAWYMRHQSTWMGTGWSTSVCVLVFVSAGVRMWVLRRTWRPETQSTRAFVELWYKRVEARIRLLRISTYLSIGWLIFCAALTAVDWSIIGQDVGDHPKAWVALLVVCVLMQAVLLCYGVAWLRRRKLAELNEVKQILDEMDGKSVR
Ga0210395_100022497F002437GGAGGMNLSEIGIRRLLQVSSALVIVGLALEIVSLLWFHPLSFVLFAFVAASLIGLGVLVYLASLAFAGAPPADNRN
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