NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10001226

Scaffold Ga0210395_10001226


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10001226 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19932
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016178Metagenome / Metatranscriptome249Y
F020084Metagenome / Metatranscriptome226Y
F025331Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100012261F016178N/AMKLNEHERSRPNVAGLTSPVQQAEMKLLLAGRWPPLKPLPVFKYETDEYRASIDFDKTRGEWICHKTSLPSNRVQELRGGLTEITMALPPGQAEAFAECAAADQQEQELEKDASRRLQAILEWRENYENGA
Ga0210395_1000122610F025331GGCGGMTRIILVALLTLHGSLGGSPWDKVPAKWNLADVSRILQDSPWSPAGVKLEREHTSRQTDPQTGMVTDAPVNANTASPIPGIQISRSKPQPRVPVTWWSSKTIRLAQQRLRQLSNPALTTEPLRADELPDYVLVIEGSEPLRILQAAKEDLHDTVFLELANGAILDLERVRFFDGNEQEEPRVEFHFPKQIEGQATLDPESERVVFHCKASAKVPSPGHDNALALRAEFKPRAMRVHGVPD
Ga0210395_1000122613F020084N/AMTFQRRETVWTTPTRIMESESPREGYVGFKLFWRIGGVAVLTITALAFAGHWAGPTLAQIRPPESEILPFIGTWTAVHAGTPIIVLQLRSEKSELVGAIQVCGYNVNTTGTVDVVTNRTLSKSLSINNIKVSGRSMSFDWKDPDGDNDHWRLELTGKNEGQIVWVGLPSDVRVQPIAVSKSIPKSR
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