Scaffold Ga0210395_10000048

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000048
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126922
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (75.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029230	Metagenome / Metatranscriptome	189	Y
F083355	Metagenome / Metatranscriptome	113	Y
F092653	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000004885	F092653	AGGAGG	MKKRILLFIPILLLVTVPLLAQDDSHSKKTTNCSGVISQDGLSFVSDKDHRTWKIANPAVLRDMEGHHAKLVYHLTSNAGEIFVTSAAIVQEQPTAAHNSGDPAVPK
Ga0210395_1000004889	F029230	GAG	MNTLLKVTLFAFVIGLAILCCAAPWTTTPAGSDAAHNSLGYAAIWSHQFAAVPGARVDLGAFAMLAAVVAFFAIVIGASSYFFRNKRGAEREDV
Ga0210395_1000004891	F083355	GGAGG	MQPGYSYALNARLEPLCPRDDKIMRYEASGLPSGTDNRPAYRCGHEGCSVRYDLLNGYFTLIGMPEQVNPVPEPGVNTLVCERHGTWLHRRRERAKDWGDEWCCGVEGCDFCIVTGTKGKLG