Scaffold Ga0210395_10000019

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000019
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 246945
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 195 (84.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001095	Metagenome / Metatranscriptome	780	Y
F002583	Metagenome / Metatranscriptome	546	Y
F003141	Metagenome / Metatranscriptome	505	Y
F052771	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000001916	F001095	GAG	MKRWRKKVLDVGVEARRAARNSGIAPAATRVIADKRKHPAKHKKKWLEKEAE
Ga0210395_10000019207	F002583	AGGAG	MKRLVPIPSSFVDHLKRAGETGIGYQVVSVELRDGRSFDQVVTSEGCVIEVRGFKEIPFSPEEVASVNVNHKRWNFRGGSEVRSKARAATA
Ga0210395_1000001939	F052771	GGGGG	MDGKSSSPITRREFARRAAMVSAVTMVPAGALAVHSPSAGPPVTQTPDSPSLSAEGKAEAEARYQAILAVYGARFSETQKADLRRLSYQAQEPLDRLRAYSIENSDGPALYLKPLVEREKKTEPVAVPRAAETAPKQP
Ga0210395_1000001952	F003141	GAG	VQITSLRAGSTRLREATVVEFGGSEHAIFLSSLPLEFDDRVRIERDRNGGTADATVIAVQYHEGRKAVAVRFLQGPCAWVTQP