Scaffold Ga0210395_10000005

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000005
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 372023
• Total Scaffold Genes: 324
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 265 (81.79%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001278	Metagenome / Metatranscriptome	733	Y
F001621	Metagenome / Metatranscriptome	662	Y
F002218	Metagenome / Metatranscriptome	582	Y
F011861	Metagenome / Metatranscriptome	286	Y
F017745	Metagenome / Metatranscriptome	239	Y
F022935	Metagenome / Metatranscriptome	212	Y
F038319	Metagenome / Metatranscriptome	166	Y
F040253	Metagenome / Metatranscriptome	162	Y
F094247	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000000510	F040253	GGA	MKKKTKKVMGEMTRASVKKEMAKPRMAKSVREADINLAAQIAHR
Ga0210395_10000005116	F011861	AGTAG	MSRFEYSVITKASPALAWLVFSDTHRWNTFANVYGELRWRDGNPWEPGSRLQIELLRPVNAVIDHVITTCVPGKKVGWIDHAIGVALAQWVTFEERQEGTRIHTWGEVIHSGITIGGRTVEELLASFTRTWYDSFRVACNQLVLPGGAGPDDAAFATQ
Ga0210395_10000005147	F094247	GGAGG	MRTSSVQVASLLLLGMLSPMVLAQDKPKVDEKARVEAPSTPIKVQIVCTEFEGDKKTKSLPYVMYMNAPDATELRSGWTKFRIGSRLPVYVGKNEMQYVDVGTNVDARAAYTGDSHVLLQITLERSWVEGEVSVPVTKSDASPSDPTGGHFQEPIIRGFKSELDMKLRDGQPVESTVATDPISGKVVKVEISFTVVK
Ga0210395_10000005156	F001278	N/A	MNKLLITEITRMGPAFCVIGLHRENGKIRSVRPVTSTANSWLHFPYHRGDVVQCELAPFCGAKPHIEDRVSTRGFQKESAVPEPEVVAFLRKAEIAGSLPDLFGCALHENRNGTGLHATPLEPMRSICGTETKNLRLELCANELRATLVLSSGEVLRDLPVVDRDWRDFIDSALAEGKGANRVGRLQRFLNSQFHYKILSCPHHFIRLGLTRPYHDLCWLMLDTLFPLPKQEWLEEL
Ga0210395_10000005227	F022935	GGAGG	MSRRILSVALSCLLSAAALLAQAVPAGVVLQSASARLNTTDAAVGTTIFDGDRMETQEKGALSLRSGQVQLTLSEQTTVWMNHENLILTPTLQRGTVTFRAENGTGVEIRADDIRVRPNSPVLTVGQVTLEECNVIVTARTQDLEVTAGKENKIIEEGKTYRVARKGVCGAAVNHAPLAVGQSRFFLLPLAVAVPIVIWLTTRSSESPDHP
Ga0210395_10000005263	F017745	GGAGG	MSFNDVPVSYQIKFEKDHANVKVTYDLSVPVAGPALIADFQATVDGTDLISGFIQGQTAFNGAKFHTLADPTKDVTVSFSISSNQDWSASDDDVLRGEKDYDDAEFSS
Ga0210395_10000005304	F002218	AGGAGG	MRKSSSGHASQAVERVLELSADAQITRRITPKDSPAFHSLTGAIAAYGKALAILTALQQREEFYTIIAQSELSERTSAVS
Ga0210395_10000005305	F001621	GAGG	MDNQVPKYVTQERAALLLGIPEEELRWISSELELGHTERVGDQKETYFTYEELRQICLLSRHQLIRGKF
Ga0210395_100000058	F038319	GAGG	MADLWWAAPLTDDQAKNVLLSLNPNADAVSIYSTLERCKKDAWKFGVCLNEFSLRNGSEAANDARAAWSEIVTHNSAANPNLNYELDRKSFDLLAVDVRVACLKQLFSYARMTHGNGRVLRMGVAATF