Scaffold Ga0210395_10000002

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000002
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 502771
• Total Scaffold Genes: 429
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 297 (69.23%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F001950	Metagenome / Metatranscriptome	613	Y
F002492	Metagenome / Metatranscriptome	554	Y
F005311	Metagenome / Metatranscriptome	405	Y
F005654	Metagenome / Metatranscriptome	394	Y
F006606	Metagenome / Metatranscriptome	369	Y
F008092	Metagenome / Metatranscriptome	339	Y
F010261	Metagenome	306	Y
F021011	Metagenome / Metatranscriptome	221	Y
F021815	Metagenome / Metatranscriptome	217	Y
F038576	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000002107	F021011	GGA	VDAIHGGEGDEEVKRNHFIFVLALGVGLGSVSHSLELRAQEAKPSGDAAKPGGTAAEQNARSGQAYSGMYTFLKEGELVQLTVEDAGHVTGFISRFGDGENDKGEFLDQFFKNGKIEENKLSFTTQVVHGVGFDFKGTVERGEGKNPGDEAYFVLKGTLTETETASDASKKVTSHSQDVVFKMFPQEAAPAAAK
Ga0210395_10000002112	F038576	AGGGGG	MEKEKLGLVLCLIALSVAASLTLSCGAKSQDQDPLASITLSPATADAKDYPNGQVQFIATGYYIDPSHTVTPLTATWGTCYQFAPTTAVSVTSTGLAQCASGAIGNYSVWANDPAPLGPGVYNCPASGACGGGCTIQATAQLTCP
Ga0210395_10000002161	F000138	AGGAG	MHMQLASSFRIPFTTLLSYIPVIATIVTTFFSIILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERVSASEARIIVTNLAKTSVLLQLLQLRKISHATPFERCRLNDPLVGGMTWTQEMGRRILACTGQEFEGPIAASMTFYAAGRMYRTDWFRSQIQVRDGRIINLEPSNMPTRRVRAVERKGPERRREFAQDVTAGVAPEKTRFKPDESYFVTGA
Ga0210395_10000002229	F001950	GGAG	MQIMKHDSCRRLTTAALLGLICAVSTFSVGQADNFQPNPAAGAGKIIVHSKFGGQIFGWDIDQNGTEGVLSEALGLSNGNILAAVETFDQTTGKILSVVSRTETQDDFVTEGVVGNSVGLVEHEHSISLLNVQRTFYVINPLSTNKFTGKWTPPIGTEHLIRGVSRTQGTANAAIFAYDNSGNFIPYVFSTNVAANTFGPVIHIPDALNFASVPPPLAYNTVTNQAILGGGDGCFGCFPVIGLADLGAGTFSEFTGIGFGFVNGIAVDAADNIACTTTEDDASVEFYDLSTQTGFTVVLPNTGEQQIFSGADVEYDATHKLFLVAQPVSSQTATGSTIYVYDTSGNLQETLNGFSFSNASTVIAMHIALHPSTRTGFVDGPSAGVTDIQGFTY
Ga0210395_10000002256	F002492	GAGG	MSTVAASTSPHLAWHVLYQAALFEPDANKIPQRIAEAETAILSRIKELFVVTTDHIEEDIVLDDALYAMRALRSCVASERTAA
Ga0210395_10000002312	F006606	AGGAG	MKRMLLILAAAVLFVNTLVIPTAVRADGGAGGTNCGNTLCKP
Ga0210395_10000002336	F021815	GGAGG	MKSDHSGKDKNEVGVELKYCEHCGGLWVRERGAGIVYCDRCQPLVADLPAPKKKPQRITLPIRPHTALEDYEYDADGEDAPDLESANGAAAGGAA
Ga0210395_10000002353	F005311	GGAGG	MGSGICGAALVRAANAMLTALGGDQVTLLLPATATASDAAGQLGLVDPGVQNVIITPVVTQNLPTNNSGPTRRIEFTLPASAIDAQLPTLGMASAEDLFNASLGMMYDGDLFHVAAVVTESFAGTAYFYVVTAVE
Ga0210395_10000002357	F005654	GGA	MSEENPLSRQRNRAGGERPPLVQYTAKDFQLEVLGKLAEVQSLTEALEESWNSKLEAVKEQRLPKFDVRSLIALGAIGLSLTGYGIQEARNTARQDSEIDTTKSRVARLEQISAANTESRIRTEVQLEELRNGQAEIKELIEAHEGANKRASPENRDKSH
Ga0210395_10000002358	F008092	AGGAG	MSTPSTTIITNLKTLTPPTANTLADADTYGMDMPGMLSGALLKANELKVCLTLIVNKTDSADPNLATLNNILASLT
Ga0210395_10000002401	F010261	GGAGG	MSGKQMFPCPVCTGPREVLLTKKDKPYLTCDPCGVQVFVRGPAGIKEFTRLLQSTSEEPLLVRLTHMEKRYRIACPDCGHKFWITPKLIKTSMFDGSVKGFHCPEGDCDGVALWNEEAK