NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10009529

Scaffold Ga0210399_10009529


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10009529 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7586
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_100095296F003337N/AMMIFLCPLTLTATDTKSAVLHSDGGVWVNGLEVSASTVVFPGDLLETKPGFVANLDAEGSSVLIQPESIVKFQGTFLELEHGGLAVGTSTSMSVHVNCIKVEPVSTERTQYDVTDVSGTVQVVAHKNDVNISRGAALKKATSDDSTQSATVHEGHDATRDEALMCGAALRPETAGSLNTKWLEIGAGAGGAVLLCILLCKSSSHSTSVSPSAP
Ga0210399_100095297F004095AGGAGMSGVNGDKARFNRRRRQKISRRLSNGKMLKELAGKNLVAPAKAENLKEKSA
Ga0210399_100095298F002101AGGAGLTAPLTALLSTAEHIPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVVEARGWWRADLYNLVLINASAETDTRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHADGGSSEPDADALHRELVAELIAQTSAGPTQRWGILEACKKISSVRAVSEARTRAIRETPRPSRWTEAAFELHSTPETIAPNLFATETAAPQVAATEIEKEEIL

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