Scaffold Ga0210399_10009025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210399_10009025

Scaffold Ga0210399_10009025

Overview

Basic Information
Taxon OID	3300020581 Open in IMG/M
Scaffold ID	Ga0210399_10009025 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7792
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003226	Metagenome / Metatranscriptome	499	Y
F031806	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_100090255	F031806	N/A	MRKDLSEHCFQYPTGMRGLECYGGPPVTRARMLESRGHHVTSVLGNDEAFGLDAAVIAAADSILIGFSAPYPVRAALIHWFKQLYPNIPVVALRFHSPESFPEADGDTVYDDPEVWLAAVARALNRSG
Ga0210399_100090257	F003226	AGGAG	MDSQFSVETAVCSEHHRLLAQCERALEIWNEHRAEFCQFRCVGREAGDELLRLQAKYARAYTVLQSHERNCSLCQLASRMEGHNFENTSDTLSDYEICT

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