Scaffold Ga0210403_10024816

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10024816
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4782
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000987	Metagenome / Metatranscriptome	813	Y
F006203	Metagenome / Metatranscriptome	379	Y
F015646	Metagenome / Metatranscriptome	253	Y
F032732	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1002481610	F032732	AGG	VKLTFSAVILFGLTVTLFQGSPAHGQMGPGSMFQVVPTPNENSNSELLAASASSPNDIWAVGQSTIHFNGTKWTAFPAPMI
Ga0210403_100248165	F000987	AGG	MSIQEVSAEQLAELFHHYHQAFEAGADCTSKPTAEEWEQVSQPEKDSLIAAARLTLLELVSSAKEQEDPRRYFAKPGEAEWGC
Ga0210403_100248166	F015646	AGGA	MMKLRLTVVLTLTCLLGLGGSAHAARDNAHSVEIFDVLQIGNTKLQPGKYKVEWQGTGPAVQVSFEQNGKNVITVPGTLKTNDDGVKQDAIVTEATGANTTTLKEIDFGHQKEALVFDQNPGGM
Ga0210403_100248167	F006203	GGAGG	MLESSVELLGGLFLSALALLIGSCIVGSIVAALRALSRGTAGVNKR