NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000063

Scaffold Ga0210403_10000063


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000063 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117364
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000312Metagenome / Metatranscriptome1324Y
F025597Metagenome / Metatranscriptome201Y
F041035Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000006337F025597AGAAGGMGNFSWRALFWGWQHGDNQGPRNAPKENGILMALLDSMVSANFRGDGAGRVVIFPADRRNRGYVVKSPAEELKIRSFLKMFYSAHFSILFLGYFLAFEWSRQIYRALGRPEAHMFRAMCISAGLYFFVTGVPYFLLWRAYKKSFLSFVSPEDEVAVSGRSAGRQRVSLFIAGALIVLALGAVLLFAIRHKP
Ga0210403_1000006353F000312GAGMNRTFFIIMIPALLVAAGYVIVLRYMGFAPGYPRLIIAMALFFGAIYWLSRRNARKTETHRS
Ga0210403_100000636F041035N/AMKRRAWIGVVALTAVLCSIAILGYQRWRAQNETARSDALALMPPEAGAVLFADFDELRRAPFFAQLFAWAPKPQADADYAEFLKNTGFDYERDLDRLAIAVLRRSNDSSLFAVADGKFDREKIIAYARKIGSAATNGSREIFSVSLSGSSRKISFTFLSKKRIALTDDAGLAVFLAAKKANADTTEWRARFERLAGSPVFAVIRQGAGTGTELAAQAPGGLRSPELSTLLDQLQWITLAGKPENDRLRVVAEGECAAEATARQLADLLNGVVILAQAGLNDAKTRQQLDPTTREAYLELLKSADVARLDRGDTKSVRLILEITPKFLEAARTASPAIPPNTTPNTPQPQKSAPQKKGHT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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