NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10080459

Scaffold Ga0210407_10080459


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10080459 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2456
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F013395Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100804591F001367GGAGMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVAQVDTSLQVSITDATAPPNQLPTDLLVPVKIWER
Ga0210407_100804593F000739GGCGGMSRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0210407_100804594F000512GAGMRGAIQSRSGSCTVQRGPRSASSRVTDHVSRVTILRPGRGPRITILRETHDTPEAVARSLELAGGINRFREPNYRAVWGWNRLAWIGGKFAERDPATGALLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTIEVESGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIERSRRHPRSAGKRALYDREQRQERAYDAWAYDLLDDAVPAFHRQPFVTVV
Ga0210407_100804595F013395GGAGLLGGAIAARSKTEPLLFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRQLDPGTVLTCAMVAREHDAIVEGQVGKVSEMVLNCGEHKFVVKTIDFSPQRH
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Institute for Fundamental Biomedical Research
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