Scaffold Ga0210407_10039094

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10039094
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3529
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F029198	Metagenome	189	Y
F036885	Metagenome	169	Y
F038890	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100390942	F029198	GAGG	MDSNANSKAVRVHGEVIVLHCWACGTAHCVKLELCVPGELTRMVCSNSNCGMSMFLVNELVVDDRSRKQMTKSELNTRITYSRFWK
Ga0210407_100390943	F001596	AGGAG	MSWFHSSTAPVDARNRASSAEVIACFRDQRNILGKIAFLITGDRTMADHAVVQACEITLQGNSPFRDWLLEWAKIATIANAISHATEAIRICETTYKDRRCSHVEHLSQGNDAERSASLDLLLGADSQTLLAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCYAMTWLHDLKPV
Ga0210407_100390944	F036885	GGGGG	MTEKKNRERVIAEITLSHLIRLGNEQGCPVSQQQALAFLNQDGRAFEMWKYMMQAAEDFIADRLFQHSFSAGQHNGFASRPRSA
Ga0210407_100390946	F038890	GGAGG	MFQITAETCGAFTFGEVLIMAAMNLESDRLNSERRVRANGAAAQNKYARHVVRTGVPKAPQL