Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10011876 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6477
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6477

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000673	Metagenome / Metatranscriptome	944	Y
F002076	Metagenome / Metatranscriptome	596	Y
F008273	Metagenome / Metatranscriptome	336	Y
F037404	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100118762	F037404	GAGG	MTPVVALDLKRITAEVAARHGMLLRPDDPAMLLVTMNEVVLQQVIGSIEARAEEMVAGIEAGVRSAQREAFGSVEREARKAGIAVREEIQKDIDAGRLHARELIVELNRAYTRSAVRRWVAMGVVLASGLFAVGVGLGVLLARVLK
Ga0210407_100118764	F002076	GGA	MQKDYRHSLDKLAGTSPKRKAALIRSLLPGIEAALQSGQSLKDIWEVLGNDGLQMSYRVFHITVSRARKLKKQTAASNWGKQDKPSEAQGLAETKVEAVEERDPFANLKRLEENRPGFHWRGTRDMKTPVDKAEDSNDKHNR
Ga0210407_100118766	F000673	GAGG	MVKRAISRNFRYPSAELREKVRVAVKERGFRSEQAFLIAACEHELRQGDSTEATTQFEARVAATLTNLAKQGQGLHTLAQAQVALTDVLLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAKEISNKNRDTLREMLADE
Ga0210407_100118768	F008273	GGAGG	MNTNNAAIRQDLIENSVDHQVSTLTSSAASPGQLETLLNSELDHDLIEWPRQYLETYLDSDATGRVPLNPEQLQDVLEAAFDRDGTAARDYLEELNNERGPINVGDSTLQIVARRGEGENTGYELLFDPTDSQDLKHLIEQLDIRAWEKQNAQTTPALETKPGIERRETTASVATHQPGSGAVEIHDKITGTDVRKLLGGGELPAGLQSALKKMGPDALVQDAQTDSGIYRGAITGETDKKLIQQITSRIVVLHPKDLLDALPAVGENVRIAYSNDRASVVPVKDRSKTQEVGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10011876

Overview

Ecosystem & Geography

Associated Families

Sequences