NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10007557

Scaffold Ga0210407_10007557


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10007557 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8198
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003526Metagenome / Metatranscriptome481Y
F004353Metagenome / Metatranscriptome442Y
F010390Metagenome / Metatranscriptome304Y
F066676Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100075573F003526GGAGMKNKLLLSMFAVSTLLLVPAIGSSGDKDAEVRTLTGCLTKAEGAHEYKLTTENGGTWELHSKSVKLSPHRGHTVTVTGKVRNADMHEAKEKVKDEMKEHGMDKDATEHGHLTVTKLNMVSDSCKR
Ga0210407_100075574F010390AGGMRHSFAAVLCSISLLASVAPAQSPDIAPIRVTAGTVVKFHLQTRLNPTAGDALDALPKGTVLQVKMLDTVDSAVHSDGTEFHGTLAAPLLLGSEVIVPSEAEVRGLLVLLRSRSHPEGFRYELLLTELTDRGKSYDLTASLNPSFLDSGDQPAPNSKSETK
Ga0210407_100075575F004353AGGAGGMRTVGRVVFSTLASLALAAAVWALPPTATHGPAMLGLANSQDAAQQQSISGKIASVEKNSFTLTVGQSQTSTEKNNVQLEAGSPKTMAFQLDKNTTIEGSLKVGASADVTYRQEKGANIAISVHVTP
Ga0210407_100075577F066676AGGAGGMNFNPMEKLQKVKEIALNFGAQQAAEAMTQTNHLLTLLQDAGYQVGELTVDLAVPPTVTVELKTGPLVSDSKLDGVFQANKDNDVLAVVLGALIQANKLRDMVKLETIELKGTKLVLKTPPSISLHWKEKTVTNAAAAA
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