NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10002391

Scaffold Ga0210407_10002391


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10002391 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16178
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F038364Metagenome / Metatranscriptome166N
F053586Metagenome / Metatranscriptome141Y
F064931Metagenome / Metatranscriptome128Y
F087493Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100023912F053586N/AMERIYDSLQRITQLWKKLELTKPNTNEYAAIMNQIRVLSKEYTALIDAPKNSQKAK
Ga0210407_100023913F064931AGGAGGMEGELLYKTAFCTEYERLLCVCVQSLDTWKNRREEIANSVLREWEAGDELMRLQADYAKAYSRLEKHIDNCELCHFVSKISGRNNASLSTAVMDKKHSA
Ga0210407_100023914F000313N/AMKIIEQWLLFKYVEGQFTPLSKPFKSKDQAEEARLKLPERERRSVAVGVIRIEK
Ga0210407_100023916F087493N/AMPISKIRKYLDDLKIQADAARGRDIDISGAPKALEPILPVLLTDLEWKDKRTGLTAKRHGLSEQFEVTPDNIRLGQEIKGLDDQIAECTEHMRLGH
Ga0210407_100023917F038364AGGMDQKTQVDAPQEQFLEAKLKKAFDEVSYSFEKILGEVRGDSNLVLAKQAVNQLQISLNQFENLLKDGGVTVGSCDSIKYLYREIEHPLSELRRYFMKEPSEILTDKAGVVYVNALKASFRRLMDIAEEMDEGHSSILKSAL
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