Scaffold Ga0210407_10002089

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10002089
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17560
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044949	Metagenome	153	Y
F047202	Metagenome / Metatranscriptome	150	Y
F055902	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000208912	F047202	GGA	MDKRIQRREAEIEDTEVPKLSEEELSSLVAAGGGRYVGVLKEIPGKMESVVLFISPRTKTTLGLRISRLTAESVREQLAESDAAFVGAVAK
Ga0210407_1000208913	F044949	N/A	MTNANGAGIVLEYRFRDSFCFHIRLAELFGSEIPKLIERLKLFHGEIISISEPGFRRYVSALTRSPRG
Ga0210407_100020896	F055902	AGGAG	MKLIPKSVVPKHASVVLSLLVCFAAVSPSASAKDRAVKPAPQPASVIAHLPLPGGPVNELVLQQRGSKQYLYVEQDSSEGVAIVDVTTPGQPNIIKREAWPNASSTGKLQMVGSRLALAAAPETATAETVSRTDTLKVLDLNDPANPRTILSLSGVTSTLADDARNLVYIANNDGLWILKVQPEQAASYEPRACLSEDAFNEFASCQ