Scaffold Ga0210407_10001398

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10001398
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22825
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019891	Metagenome / Metatranscriptome	227	Y
F050601	Metagenome / Metatranscriptome	145	Y
F057937	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000139811	F050601	AGGAGG	MHYEQQKAMQRELNERIPPAAKGDPQNELRHVVNSHRFSGKTFDQSVTIALGFVRKRYPNFTPRILPPQ
Ga0210407_100013988	F057937	AGG	MSRVIRTFRNATNEEVGRLTFEEKDDRLHIQSVAPPGIDRRFRTEKGAANWWECNVDPETGKIRR
Ga0210407_100013989	F019891	AGGAG	MSDWSRDAALRFAALQKLKQVQDAKVIRDQNDLSFHIAKVWADLCELFRERCAEFNAEPGVTGILNCDTKRAQELKITRSDNAAMLRGAFDVKRHTIHFMGPNIGKEKSEIKIEVIEGSSKMRFVDILHRTLEPQDIVDISLTDLLQLN