Scaffold Ga0210407_10000602

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000602
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39521
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014595	Metagenome / Metatranscriptome	261	Y
F039281	Metagenome / Metatranscriptome	164	Y
F058400	Metagenome / Metatranscriptome	135	N
F075231	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100006022	F039281	N/A	VIPEIDIWRVANLILTRFGDEAMAEGAKRAEEPAADGDLGGVAVWLRVIDAIRQLAITAPLGSVH
Ga0210407_1000060222	F075231	AGGAG	MSEMITEKDAAAQKARSHPTHDAALPPGQHWFFRNFASVQAALDYLNTPLVQSAGEVSAIARNDGTVGMFYIAPPTAPLQPPQRWLFRSFASPQAALDYLNTPAVQSDGEVSANARNDGTVGMFYIAPA
Ga0210407_100006023	F058400	N/A	MSTPDHDCLDAETILNDLCASKINAVISWIGDGGFHFVLGDPPQAEGWAFSTIGAAAISLRDEACAYYPDSDFARKYGGFVYDQPWPNGR
Ga0210407_1000060234	F014595	GGAG	MRAKKFAKPAARRTALTATLARFVGQRRFDRLCELPLFHPFAARKAIPSPDPVSLAVLAIDRVGPAAVRACASGVEVRVAAPDEATARVLRQALAQTARRRDTDRLIRIVVD