NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000474

Scaffold Ga0210407_10000474


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000474 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45408
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001994Metagenome / Metatranscriptome607Y
F020212Metagenome / Metatranscriptome225Y
F061219Metagenome / Metatranscriptome132Y
F073818Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000047413F061219N/AMGKVKLILGLAVLALAIVTGWQIASCELANLAFREEIRDIAAQGGARIGLLSFNTDEELRDAVIREAKKHEIQLEPGQVTVERTGTPPAQIIYLSVDYKARVTLLPGWSFTLHFRPSSAR
Ga0210407_1000047414F073818GAGGVAHNITAVTYHIRFEKDRASVKATYDLSVPIGGAALIAGFQVSVEGVDLIGNFIPGQSRFNGAQFHTLLHPDQDATVSFSISSNEGWTASGTDVLRGGKTRDDAEFSN
Ga0210407_1000047415F001994AGGAGGMRAVLISVAILLMCGPVPAQQRRRPTIVQRTFVPKEPLPCIAFNQMASRLDAVYRIEEISKTDYDQGINKYMNAAQEEGVDYVIAEKDKYQRVSLQRDKLAEFIRWYVVEGGRGQMDAANTQCTTELGEREERYSGIYDLRRWQDAMTIAQAEGLLADVALEGQDVVIKALLESEASRRKDVDRYNKLVESVNSYNKAVNDLVVTVNTAMNEPKGSKLAPTLSFNFVRLPPMICTGNTFAFTNSTAYMANVSTMANATPTMHCE
Ga0210407_1000047441F020212GGAGGMWEDSRYFWVVHCKNHWFHVRKNLFFRHRIPLAETDAVTPRPAIDCRFRARCDQCGKEYLYKPSEVLRFEQEPPESFTPHPLFRDEETGG
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