Scaffold Ga0210407_10000353

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000353
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53896
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F004677	Metagenome / Metatranscriptome	428	Y
F018344	Metagenome / Metatranscriptome	235	Y
F042543	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100003531	F042543	N/A	VRIGQTNDLPSIAGVGKDFLVTGEAGIENDFAATARNRAGRAAIKDAPVFQREDRGSVLNFGQWVLPRFSSKSAIHFVSASVVESEPK
Ga0210407_1000035346	F018344	GAG	MKRGECAAILAPVPGGGVKLLAPPSYLVEGNLSVKLKRGSGEVFVWKKKEVRATPEKLKELESFRRELTELLDMPPKQ
Ga0210407_1000035349	F004677	GGAGG	VNHYKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEIGALLDLWMEENSAAMLARWLMEQRERPPQALEDTPAGESLPKNGHTVSDNFFADRTVTPPANRGPA
Ga0210407_1000035352	F000188	N/A	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDYRARLNEWVADFALVGKAALDGPDWASRMVLFRLYYLGLAPYENARHFLGLSETNWVNWTEQIRHRCGKELLSRGMFPPRKYFTSCE