Scaffold Ga0210407_10000031

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000031
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 205648
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (62.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001765	Metagenome / Metatranscriptome	639	Y
F008657	Metagenome / Metatranscriptome	330	Y
F025166	Metagenome / Metatranscriptome	203	Y
F035013	Metagenome / Metatranscriptome	173	Y
F036816	Metagenome / Metatranscriptome	169	Y
F062008	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000003114	F062008	AGGA	MVYEQYDFTRNPIVEDQVFFLESKCIRCGSSVLARSLEELLQEEKRHWTECRVMHTA
Ga0210407_10000031143	F001765	N/A	MPYISEHLSSLRQEIADLRNLNARLSEKGGHNAVDQTALELRTNRLREIKQELSKILNRPDDPKVWWERARRPQHPV
Ga0210407_10000031145	F035013	GAGG	MAGRSAAQLREELSRLLEEQTESLRNQTFLGLDKSELQWHEVRLKRIREVSADFLAALKRELH
Ga0210407_1000003124	F008657	AGTAGG	LFAAEKGAHLTHDEVKASYVVIRHNVRTYESAGVVEVVKGRQNAESALKNFESGQSSSDRHEGWRYFLEKTTLKAGTDPAEATILRQTELETRESKATLDAGSSTGGGFSR
Ga0210407_1000003138	F036816	N/A	MLVIVPQSLLGQSSPGQTGQGQAPPGQALPEQALPGQGSPGQIPPGQSIEGQKAGAILHAQGGVWVNGYEARDSTAVFPGDLLETKPGSSANLTLDGSNVLIQPESVGTLQTNLLELDHGSVFVGTSKSFKVQVRCITVVPALSEWTQYEVTNVSGNLQVAARKNDVNVERKMDGTKPLPEPTASNEASVHEGEQKSFDLSAICGAPARPVGASTSLSPKWIVAGAAGAGVLVCVLVCHGGPKTPISSSSP
Ga0210407_1000003156	F025166	AGGAG	MKYVKYLALLSILAVLSPLGAFARDKNQRSVDIPDAVQVEGKQLEAGHYKLEIQGTGADVQVSFLQNGKTVATVPGKLKTNDREASEDAVVMDMASKTLDEIHFGRDKESLVFQQSGM