Scaffold Ga0210407_10000028

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000028
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 217676
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 132 (70.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F004485	Metagenome / Metatranscriptome	436	Y
F005514	Metagenome / Metatranscriptome	398	Y
F012141	Metagenome / Metatranscriptome	283	Y
F030295	Metagenome / Metatranscriptome	186	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000028108	F004485	AGGAG	MNYREQYAPGQVNAVELCRLWSGPVDALERHLSANTWALSAVAVALIAYPIARIVIPAIVHGIVTHAIVPDAVRTVLSLI
Ga0210407_10000028112	F030295	GGGGG	MNPVRLVPGVGVVLLLACALCDGQSLGDAARQNRQKKETSGTTAKKVYTADDMSNPAPPLTHGPQDLSGTWSFTHFDDRFQGSITLQQSGSTLQGTWHTGSGKSEPDTAVTGSVDRAAVTLRRSLGPNQQTYTLTLSADGNGLDGFGEGYFLHHTNLNMTRNGAARPATAPPSTTH
Ga0210407_10000028116	F005514	N/A	MAKVEATVMRQFVITITLVIAVMFSVFATAAETPDLSGTWVLNVAKSTLPKDSTIKSRIIVIENKKSGIVFHYKTDGKKSTETYTPDGKKRVSVNMSSGQLNSSASWHDSVLVIESTLDIKIPNATVVVTGLKPVIDTWTLTAEGRTLTHDADDHKEIYVYEKQ
Ga0210407_1000002852	F000838	GGAG	VILRGADLPVQSEWVGFVALLALVGVFSLTLAVLPRSWIAKLCRKDRDDERIFSAPLKLLGGFAAISYLVALVAYLAPHRWDLNVQLMFSLCPLYFLKMTFDPSMVATFFLLAPMNAAVYGGLGLTVGYAWLAFGKRTSGQTN
Ga0210407_1000002857	F012141	AGGAG	MRGERYWIWVVVRLGVGVAIVAWAASYLTTGSGEKEFQKTLDAMKQVHSFRVAFTSSPGTQHNEMLWEIDCRRNLMHYQWHVVDTAIPTSEMARDEVHVATQAFDRESDGSWSKARYEAGHPPSWYCGSLAQGNDNNLLPRISTMIKRGILQKGDKKTVNGVRCQEWLVAMRGAPSGLEHDTVCLGLDDHLPYELTVDWEHSRSSFSDYNAPISFDMPEAAVQSTSASAGTN
Ga0210407_1000002860	F087522	GAG	MRRLHSNFVAAGFALLLCAGPGVVSMQAQSRAGQHKILLQANLKPGEVLRYELEAAGSFLPIADSTGAILAPARGPCDYTLAAIVTLRPQSPDKDGNIPVEARYSATRVTSVRCALFSAHDFQKRVAALESGGVMFRVGPHGETALNHTSDGYFKYWDGGDLLRKVTQDLLQTEFASKPVTAGDSWKPRGQFAYASDRALKDLELSGADLRFRNLVQVDGKSCAWVTSQYIFSPIDLPATGTASSGRTVPGAGNNAVAAVLRISLLLDPATHHVAWLHRSQNIDNKLTLASPYDDSDAAENAAEPADPDDSENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDAGSVEWLAALKNFEATPEPESGTTPVPVTKTLLPNPIILAAKPAVVKRTTRMVVDSDSLVATPTGFTRYEKGLCRDAWFCAMASVALPGEVQVSDDTPVRTVYLARKGDLLISVSVGPALDRHDQGLTEDEELKKQANYYLDNYVWLAAKPGIGTSFTAATLDGYPGLITDFSATQRDLANLHGVLGLILTPWGKVVPVSCSSDSTSSAEVQSLCETVILSVSLRR