NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000022

Scaffold Ga0210407_10000022


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236671
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)150 (72.12%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002681Metagenome / Metatranscriptome537Y
F003120Metagenome / Metatranscriptome506Y
F003204Metagenome / Metatranscriptome501Y
F005605Metagenome / Metatranscriptome395Y
F007340Metagenome / Metatranscriptome353Y
F010350Metagenome / Metatranscriptome305Y
F012712Metagenome / Metatranscriptome278Y
F017392Metagenome / Metatranscriptome241Y
F020043Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000022157F010350GGCGGMRVPVEIRATDAEGKPLEESTFTGVVGASGAMIWTSRKLQVGSELEITNRFSQQTARFRVAWVKDQESGKPWETGVESLRPLDDFWGVRFPPKPGHA
Ga0210407_10000022165F005605N/AMGLFAAGRNSLRALWRAARELFYEVTGVIFFAISLSAVQSAWRAWQKGAARWLIGLSAGYALLMVVFGLLSFRDSRRVR
Ga0210407_1000002228F002681N/AMMPATGEKRAGPQRERLLGAYLFALCFYQIGIYCWPSGPPFVLDPRAGIPVLLINHFSFDNKVIYPVEWITATWLVFAAVMIFFRGKLLRTYLAAEIALAAPTAYYICILAIQRGGHFAPARVDLVVTAALFAIFSVVPAGLAAQRLSARSIKRT
Ga0210407_1000002231F007340AGGMISRILASMTAVLGAAGLTLACLIALVQGTIRAVELNSLPLRALAVAADLLFGTVLLVGCIYLATRLAVLIVGVGDAEFPAFPIDEYSREVRSGDSAKI
Ga0210407_1000002235F012712GGAGLAARTQIPGIRWSFWLRHEALRNGVLTGIYLACVLVTWLEVANRVRELEAFAGTRNFIAAVLFVGILAIPALHFRHDPAKLFVAGLTAWALLTLTYLVAEINFKLLESRMGFLHVFVLGAVSYGFVAVLDWVFLMCAGARQQHIAQSREATPVTDRRRAH
Ga0210407_1000002252F003204GGAGGMTADLNSPVAILDKEIAKYPTYTIEMFELCDCCGARFGIGYHQECKLHLDPARRADEAPKKLREMLAKDHNHDREHKHFTEIWVLSDWGASV
Ga0210407_1000002257F003120N/AMANQNVKFVAIRTIKKPVRVEFKTKSGKTVSFKAVKTFEKKTPVSFRAKKK
Ga0210407_1000002266F020043GGAGGMSAKVTDESLAELVSGLSEAFTVFSNEAAGLSALLAHSEAPVSAESCYELQKQCAAEVQAFEEYLNRKEEILAHLGVESRQAQPY
Ga0210407_1000002288F017392GAGMPKMNTIEQRAVGSCQLDEHNEGRIERNLFNANGKTWEALRFCKNKDGAHNRVHLVLDEEKFVELFRDAVKNGVFRPRTLGELRMILEDIPDPFLDVIGSISDGTLSQNIDDELYPERPE
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