NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000002

Scaffold Ga0210407_10000002


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)444524
Total Scaffold Genes384 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)283 (73.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001195Metagenome / Metatranscriptome750Y
F004190Metagenome / Metatranscriptome449Y
F005312Metagenome / Metatranscriptome405Y
F007939Metagenome / Metatranscriptome342Y
F013939Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000002180F004190N/AMLYQLSWTTLPGLRGLSCSEFRANPTSAPDIERGVACDCASDAERDALLADLEMHFGPRRFLNTAAAFDAVKDYIAARAARS
Ga0210407_10000002204F007939GGALRKAIQILGISLALVTLLIFATGVVSDWHHQGWNDDAHCPYCHLGHQAPAQLAAAPSASMLKPVASLPLPQDSVLAASPHFSQTSPRAPPSL
Ga0210407_10000002264F013939GGAGGMSVWVNWGLVVASIAFIVGDLVLEVYEHANLAVLGLVLLAGGILGLAIDSATTGLGTAIVLALVYMVINRRPGHMLPKHVSGN
Ga0210407_10000002365F001195GGAGGMSRAALTRTNLLLETRKVRQLREALGSRSNSEAVRLVIDERLAVEAGLQALRRLRKRGGLDDLFRRAPAKTPPPKP
Ga0210407_10000002383F005312N/AMLGHRIVVTYRAGDIVLPATGNLAADSGKSIFLEESYQQQGQVKTFRWEIPYGCILELNECPEGPKASASVQQPRQESAETARQSGALEPKVRPA
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