NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194129_10135977

Scaffold Ga0194129_10135977


Overview

Basic Information
Taxon OID3300020578 Open in IMG/M
Scaffold IDGa0194129_10135977 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104439Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0194129_101359771F104439N/AQPRGILFNARQNNIGSNIISASNINREVLTVAYDGSIGFGVSRPQGVLLNARQNNIGSNIISASNFDREVLTVAYDGSIGFGVTQPRGILLNARQNNIGSNIISASNINREVLTVAYDGSIGFGVTQPRGILLNARQNNINSNIISASNLDREVLTVAYDGSIGFGVTRPQGVLLNARQNNIGSNIISASNLDREVLTVAYDGSIGFGVTRPQGVLLNARQNNIGSNIISASNLEREVMTVAYDGSIGFGVTQPRGILLNARQNNINSNIISASNLVREVLTVAYDGSIGFGVTQPRGILLNARQNNINSNIISASNLDREVLTIAYDGSIGFGVMQPRGILLNARQNNINSNIISASNLDREVLTVAYDGSIGFGVTQPRGILLNARQNNIGSNIISASNFNREVLTVAYDGSIGFGVTQPRGILLNARQNNINSNIISASNLDREVLTVAYDGSIGFGVTQPRGILLNARQNNINSNIISASNLDREVLTVAYDGSIGFGVTQPRGILLNARQNNISSNIISASNLDREVLTV
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