NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208221_1000008

Scaffold Ga0208221_1000008


Overview

Basic Information
Taxon OID3300020574 Open in IMG/M
Scaffold IDGa0208221_1000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45245
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (50.67%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F001964Metagenome610Y
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F006135Metagenome / Metatranscriptome380N
F012111Metagenome283N
F016253Metagenome / Metatranscriptome248Y
F026825Metagenome / Metatranscriptome196N
F028148Metagenome192Y
F038648Metagenome / Metatranscriptome165N
F048938Metagenome / Metatranscriptome147Y
F068565Metagenome / Metatranscriptome124N
F071018Metagenome122N
F086618Metagenome110N
F094883Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208221_100000814F071018N/AMKVSLGDVDNIETKSEFKVRMSYLENGSTHRSLFRLMPPLHHDADPNRSQVLAYIRENLACDIGRSIRAFNSMRHPKSKVVVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAKEMGKSQDEDVNWLEEMKESLGRPSKKPRKTKHQQPLNSIESMVAAAWK
Ga0208221_100000815F001964GGAGGMSRNLFAKPVYKVQLSGAIGWSDMKEKIVSYRTVEFESRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERMSEKPKSI
Ga0208221_100000817F002227N/AMKLTIQSRDNAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGTQILELIIEREIGDKLCPGTPDLETL
Ga0208221_100000820F028148N/AMPQGVLRQGRPQVLPQNNPMKTIHEIIQEIQFFDPAVRAFDPHNLPQSVRAYLHHNYRMDARLTDEEQQVVETAFPSFADDLVQTIIDDPRPDATRYYLFDDGSLYARTNAGPELWSDAQYFIVERILPAMRLTRLEADLMREIGMDDQVNEVRDDFYSSFAHILHRDCGIPHCDAREHWSAYSRQLGDGAREEAELGGSESGRKEGIRFASECTITA
Ga0208221_100000821F086618N/AMASIQRIETAVDNLLNGNLTHARKSAHGLTYSDIFDWLTGPVGWPENRSRAIADYLIGRIDYRTYCNADR
Ga0208221_100000827F005388N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPIFTSQGMTIIFRRCTGALTTVICS
Ga0208221_100000829F038648N/AMPSFTIPKGVEIPENLAEGEAFQTMATIVLGKGGKAEVIEIDGVAIPGYEKKSKGKKLAERGEEEEMEVEEGATPGGGGFIAEVMQRGAGPMAR
Ga0208221_100000833F068565N/AMLTERTIFSLCEVLPNTTLQVRLSDQIVDGESVKASTFRRYCLHPGSDLTGQPEQVVAIAGAVWTPAAIAAYNANLKPAIQ
Ga0208221_100000835F026825N/AMTDHHTFLRDISIGVGGPIIGILGNAVFSDPHLKTASLALGAFAALLTCVVKALELYRKLKTEK
Ga0208221_100000846F004664N/AMSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIKIPSNLDDLITEYACRNGADCSYNEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSTCVYNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET
Ga0208221_100000849F012111AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFVSPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGFSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSVLPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATTDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRNTWKNLSYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQTSLLWSGSAVVFDNRLLMTGQPRYNAEGVVHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGEKFDNNLVDGKKNIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGSASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDVPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0208221_100000851F005740N/AMKLIVQDIRSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGESNGACVGKQLMDRGTVVSYRDMSGGTNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGLWIDGEKLTLAAPYVQSTKKFISLTGVIRQATNTVSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0208221_100000852F094883N/AMAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIAQAGKTIGSRLRGEVDQDVQSQLQRAVAGRAVGGGFKESEGIRTNLLARDFGLTAMQIQNQGLAQAQSFIQQQRTMGMAQPFSISSMFITPAQRIGAIQQQQSAMYGRDLTAAQVAAAPSPMQQSAQTAFTNFGGIAGGALSQYGMYQGLMQQQPGAYRPPSYNPQNDSEIYPNLYAPTPTRSDITPLSTSLFPEYGSSNYRP
Ga0208221_100000867F006135N/AMSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGVAEIVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE
Ga0208221_100000869F001259GGAMRDCAFIYVHKTNGIVRVESLDTAKHIDGNPEWNHVATINPHVVLESILRATIKDRNQIIKHLLT
Ga0208221_10000087F048938AGGAMNIEETKECIRVMQAFVDGKDLEVLGPVGKWEPLYFPRWGWDDTKYRIKPTYVLRPWTADEVPLGMQARNCEYPKTRWLIDRTSSEENRKDWCEKYEHSIDGGKTWLPCGVMEESK
Ga0208221_10000088F016253N/AMSDRIKSLIDGGTGVYSISKKEAGEIHKAAKKIKNYEVSYWTMNRKNKESK
Ga0208221_10000089F003748N/AMFQVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHSVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPIAEVDGDDLDPKPF
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