Basic Information | |
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Taxon OID | 3300020574 Open in IMG/M |
Scaffold ID | Ga0208221_1000007 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 47838 |
Total Scaffold Genes | 68 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (61.76%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Aurunvirus → Synechococcus virus STIM5 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007569 | Metagenome / Metatranscriptome | 348 | Y |
F008402 | Metagenome / Metatranscriptome | 334 | Y |
F010764 | Metagenome / Metatranscriptome | 299 | Y |
F018913 | Metagenome / Metatranscriptome | 232 | Y |
F036765 | Metagenome / Metatranscriptome | 169 | Y |
F058114 | Metagenome / Metatranscriptome | 135 | Y |
F090316 | Metagenome / Metatranscriptome | 108 | N |
F101046 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208221_100000712 | F101046 | N/A | MDFTDYGISLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPSQYSFGECYLYKCDTCKGVGYIPISGY |
Ga0208221_100000713 | F090316 | AGGAG | MPDDLQREEELFLKALEEYKEKKSQEPKDKTTNTLPAVIAAVL |
Ga0208221_100000714 | F018913 | AGCAG | MTNQQKAEELLKVFWESQAHNPAWLLQETLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELELL |
Ga0208221_100000717 | F010764 | GGAG | MIEIQKNYKLTLTETQAKELYEFLRGAKDCGHLSTDRDLVLVYHELKKIFDTGIR |
Ga0208221_100000720 | F008402 | N/A | MIDITTQIRIQNHADYWYTAEDLNVDLGCEGFTVSYWEIRKGEGDKRVNFIIMDKEEALALADAIYKLFKN |
Ga0208221_100000722 | F036765 | N/A | MTIKATEFLKLFTKAEKLDLSVEVCEDKDGDYVIRIYEMFRSEGFDEKVVITQNGESNWNKGCYSFDCMMDVLDNMLEEKLLEEIKEQKRQELLARLTDFEKDLLGVK |
Ga0208221_100000735 | F007569 | GGAGG | MKPEFSQRQYKLIYHAIRRYQIEKTVLNSSEYHDCNEILDELFDHVYTQHKEQVT |
Ga0208221_10000074 | F058114 | N/A | MIEITFTREELRHLHEFLLKNHLQVKQSVIDKIDKEVIADEIFELLGDLECLDATLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK |
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