NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208221_1000007

Scaffold Ga0208221_1000007


Overview

Basic Information
Taxon OID3300020574 Open in IMG/M
Scaffold IDGa0208221_1000007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47838
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (61.76%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Aurunvirus → Synechococcus virus STIM5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007569Metagenome / Metatranscriptome348Y
F008402Metagenome / Metatranscriptome334Y
F010764Metagenome / Metatranscriptome299Y
F018913Metagenome / Metatranscriptome232Y
F036765Metagenome / Metatranscriptome169Y
F058114Metagenome / Metatranscriptome135Y
F090316Metagenome / Metatranscriptome108N
F101046Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208221_100000712F101046N/AMDFTDYGISLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPSQYSFGECYLYKCDTCKGVGYIPISGY
Ga0208221_100000713F090316AGGAGMPDDLQREEELFLKALEEYKEKKSQEPKDKTTNTLPAVIAAVL
Ga0208221_100000714F018913AGCAGMTNQQKAEELLKVFWESQAHNPAWLLQETLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELELL
Ga0208221_100000717F010764GGAGMIEIQKNYKLTLTETQAKELYEFLRGAKDCGHLSTDRDLVLVYHELKKIFDTGIR
Ga0208221_100000720F008402N/AMIDITTQIRIQNHADYWYTAEDLNVDLGCEGFTVSYWEIRKGEGDKRVNFIIMDKEEALALADAIYKLFKN
Ga0208221_100000722F036765N/AMTIKATEFLKLFTKAEKLDLSVEVCEDKDGDYVIRIYEMFRSEGFDEKVVITQNGESNWNKGCYSFDCMMDVLDNMLEEKLLEEIKEQKRQELLARLTDFEKDLLGVK
Ga0208221_100000735F007569GGAGGMKPEFSQRQYKLIYHAIRRYQIEKTVLNSSEYHDCNEILDELFDHVYTQHKEQVT
Ga0208221_10000074F058114N/AMIEITFTREELRHLHEFLLKNHLQVKQSVIDKIDKEVIADEIFELLGDLECLDATLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK

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