Basic Information | |
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Taxon OID | 3300020572 Open in IMG/M |
Scaffold ID | Ga0207909_1000461 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13697 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (89.74%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002935 | Metagenome | 519 | Y |
F007691 | Metagenome / Metatranscriptome | 346 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F015600 | Metagenome / Metatranscriptome | 253 | Y |
F017133 | Metagenome / Metatranscriptome | 242 | Y |
F020910 | Metagenome / Metatranscriptome | 221 | Y |
F023106 | Metagenome / Metatranscriptome | 211 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207909_100046111 | F007691 | AGGA | MTKTMNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG |
Ga0207909_100046112 | F002935 | AGGA | MRERSKGYIGQIVDGKKLAIIANDIYRLQYSNDFSPCTVDNLLFVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVLEDTIVV |
Ga0207909_100046119 | F011487 | AGGAG | MGNIADEFYDEYYATTCPECKENAVDAYEEKCTHCLLEEMTMDYNEDIALEMSLGLDY |
Ga0207909_10004613 | F023106 | GGA | MRISRRITDEEKVANKMGNIISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAQNGF |
Ga0207909_100046134 | F017133 | GGA | MSIWTKFATVNDYPKGMMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVNK |
Ga0207909_10004617 | F015600 | GAGG | MMNTTLDPRLQKLIDMGESGTDILHGELKNLMLEAENDYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKSRG |
Ga0207909_10004619 | F020910 | AGAAGG | MWSRYTFVCDPDECDSLVEFTARDGFGFPLGVVEMFCPCGRKLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN |
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