NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1021102

Scaffold Ga0208465_1021102


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1021102 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015704Metagenome / Metatranscriptome252Y
F064683Metagenome / Metatranscriptome128Y
F085368Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10211021F085368N/AMRFPLAMCSDLQTRQIKWISRADQLKNGSRPSAYIHWGLPASVLAAQ
Ga0208465_10211022F015704N/AMTFATFPDLLESCTDENGCIRWGTACQAAKDHGLWDDFRTDYGVTARFGPVDTGEFLVWLGY
Ga0208465_10211024F064683N/APETMTLDLATALLNRAATGAQLLEILETIANDEADANIADCAAYFEAIQF

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