NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1000054

Scaffold Ga0208465_1000054


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1000054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39378
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (87.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002301Metagenome / Metatranscriptome573Y
F017468Metagenome / Metatranscriptome240Y
F086710Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_100005445F017468N/AMKHWEYHPEYVDGCFGCKGMSVQMNAGDADSKRSMPTKAFNKELDAYKAARAQGIQPNGTSMTKIQEAVKASEVMGRPYDGNKMPPARTINEKSAAVMKELGV
Ga0208465_10000545F000368AGGMETLKQVSLTWFRAAAAAAIALYLAGETDLKVLGTAALAGFLGPVLKWLDPSAPEFGRKK
Ga0208465_100005462F086710AGGMIGKSDTVAIGWCDNGTTDGKFTEGLMTAAIAGPGNGTPIASS
Ga0208465_10000549F002301AGGAMVEIDDVQQVLWLWFVTHPNKMSEWEALDIKDREKLIAKSLRNAAIKYCEREKAKRIGYELLDLYYYDNSVIEAFLPSIIAESYEMPAKIKDLNFKVAKSEGSNDGNNWLVLRSDIATAFYKLTEAKQNVLRIRFSTDNNEWSLIAKDLKTSPDGARMKVQRAINSLIRNLGGWRPFTDEDTPTAPIEEDDGTE

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