Scaffold Ga0208229_1008488

Overview

Basic Information

• Taxon OID: 3300020569
• Scaffold ID: Ga0208229_1008488
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2063
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008024	Metagenome / Metatranscriptome	340	N
F008996	Metagenome	324	N
F054670	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208229_10084881	F054670	N/A	VYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQMLEQADAVGCHWITKEQFPHMADHNNPDGYPYFGGTYWWAKSEHIKQLGEPARDHRFRAETWVGKKPDTKVFDSNPGWPSPEKFVVTF
Ga0208229_10084882	F008996	N/A	LSMKLLANIAYHHNPERIPNLVRVIDAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTERFDSMFADGLYPSFTRIETYDDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSVKRLKEVLTRSPEELDKIPDNGLFRESLASFPIWSLGLKPMLEFTEQGELADHCKVFHLTNNYKHGSTNIKTLFKR
Ga0208229_10084884	F008024	GGA	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISIVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFADELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAH