Basic Information | |
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Taxon OID | 3300020568 Open in IMG/M |
Scaffold ID | Ga0208598_1001263 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6175 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F001731 | Metagenome | 644 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
F012452 | Metagenome | 280 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208598_100126314 | F001731 | N/A | MTLFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQPQAGYTNLEIINLDQSNVTIAINQAITIELQDSTNTFVPIFGGSVVDVAIAVAEVGSVDYAQRINIIALGALARLPKALTEGVLSDDFDGDQIYTILSEVLFNTWEEVPGALTWATYDPAVEWQDAENSGLGDIDRPGNYELENRGSDVIDVYSLVTALANSGLGYLFESPTGQIGYADSTHRTNYLAANGYVELTANHALASGLSIQSRTGDVRNSITLRYGNNSALEVSAVDTESVGLYGQLAQIFTTTIKHQADAQDQADFYLELRAFPRFNFNNITFELTNPELDDADRDALINVFMGMPVEIADLPLNMNSGDYLGFVEGWTFSARYNQVSISMILSPVSYSLQAMRWNDVPVTEHWNTINPTLDWINATIVA |
Ga0208598_10012633 | F003182 | AGGAG | MHILQFDCSICKKLYGKAKQRHGLKKGAELTEHEWFAQCMGCGTFGIKLVDDDRIEELSDANL |
Ga0208598_10012635 | F000403 | GGAG | MSDFVEIIYPQQMMAKLMCNGEIVEEYKIEQCDKCSQLKRLDHFGYQKGYDKQDNIIWFCGDCR |
Ga0208598_10012636 | F012452 | AGAAGG | MAGFLENYEGNKERTDRWIVTFAQGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKATKETMEQVKINDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV |
Ga0208598_10012637 | F009883 | GGAG | MNEASIVIAMVIAGALWAVMAYSVGFKEGQRQGYTRGRAVSRHISQLNEKVDN |
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