Scaffold Ga0208598_1001263

Overview

Basic Information

• Taxon OID: 3300020568
• Scaffold ID: Ga0208598_1001263
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6175
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208598_100126314	F001731	N/A	MTLFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQPQAGYTNLEIINLDQSNVTIAINQAITIELQDSTNTFVPIFGGSVVDVAIAVAEVGSVDYAQRINIIALGALARLPKALTEGVLSDDFDGDQIYTILSEVLFNTWEEVPGALTWATYDPAVEWQDAENSGLGDIDRPGNYELENRGSDVIDVYSLVTALANSGLGYLFESPTGQIGYADSTHRTNYLAANGYVELTANHALASGLSIQSRTGDVRNSITLRYGNNSALEVSAVDTESVGLYGQLAQIFTTTIKHQADAQDQADFYLELRAFPRFNFNNITFELTNPELDDADRDALINVFMGMPVEIADLPLNMNSGDYLGFVEGWTFSARYNQVSISMILSPVSYSLQAMRWNDVPVTEHWNTINPTLDWINATIVA
Ga0208598_10012633	F003182	AGGAG	MHILQFDCSICKKLYGKAKQRHGLKKGAELTEHEWFAQCMGCGTFGIKLVDDDRIEELSDANL
Ga0208598_10012635	F000403	GGAG	MSDFVEIIYPQQMMAKLMCNGEIVEEYKIEQCDKCSQLKRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0208598_10012636	F012452	AGAAGG	MAGFLENYEGNKERTDRWIVTFAQGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKATKETMEQVKINDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV
Ga0208598_10012637	F009883	GGAG	MNEASIVIAMVIAGALWAVMAYSVGFKEGQRQGYTRGRAVSRHISQLNEKVDN