Scaffold Ga0208082_1020575

Overview

Basic Information

• Taxon OID: 3300020563
• Scaffold ID: Ga0208082_1020575
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F056338	Metagenome / Metatranscriptome	137	Y
F056617	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208082_10205751	F056617	N/A	MIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVDYNTLHKATESG
Ga0208082_10205753	F005630	N/A	MANLYEVNGFYGTRNRGTILVYETYSGKRWYCVEGSCNVNCTYDEIDEGCDVERISDFDTMSSRDGIYSVRDLYDFVIN
Ga0208082_10205754	F056338	N/A	MNYYDYYDCEVMADKIEELEELIKESNAMDILLEGRNKTIAELENDFPMLNICDVMDWIYFTFGKEAWSMSYDWETQKLMEFCNNFNVYLYEKPRESFFKWEGIEEAEKGRYKGVIFSDL