NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208082_1008851

Scaffold Ga0208082_1008851


Overview

Basic Information
Taxon OID3300020563 Open in IMG/M
Scaffold IDGa0208082_1008851 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2398
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002353Metagenome / Metatranscriptome567Y
F015168Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
Ga0208082_10088511F002353N/AVWFLYGISLLVADVEVKEDGVFIRLRKETVVCEDKDSSKRVSFSGAPESVVGEVPECSGSEATVSLEAIPEDLTFDSGEAFSLEGVDNIPMEELFCGSHGDGSAAGSSDITSISLDTV
Ga0208082_10088513F015168AGGAMARQLVLGNQGRTHQLGAYQGNSRGRERIAYQDLPSIHEIENTLEQLTASITLKTEDIPRRPLILPPTVYDLSEIDIYTEMARLDLQYDDLKTDKPKTASLNRLCKALCIGRYTTLGNLPPLQYKSWALVCPMNFENPDMPHGEPSHLAVDNTTKFIIKSMKHRDTIKDASGKIGHMIIPELCHLNNCLCASDCIANNQESLHFLRICAPKYLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSPVSVCGTVTPQMICRQPISELTRKSPIFRVPQYSHIDMSDDLHLIRAIGSCLSRPEIRLYTKNFTESCTPVETTEESPNLYRFPRINRQRQNTDLLSLNPSYESLDQALANEPLAEPFMGPQACPYCPTILQISEPKDYLLHLFDHHAILTKSYFTCPACIAICIYDKNTFPAHYTEVHSQASSLIMFFTETATH
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