Scaffold Ga0208082_1000333

Overview

Basic Information

• Taxon OID: 3300020563
• Scaffold ID: Ga0208082_1000333
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14350
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F021772	Metagenome	217	Y
F066573	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208082_100033317	F001332	GGAG	MMTQIQEMTALITKAEIAMKAATWEIERLRDDVAMLRKALFELAYVAEENGIYLSNLTRSTQDAIVAMRLGGFK
Ga0208082_100033318	F021772	GGAGG	VNCDICACGFNSADMRMRTELRGICLKCAEEFGFKGMTVEETARCVSMIRVVNQLKNQTPAQARHLKDMES
Ga0208082_10003338	F066573	N/A	MTIQVKGVASTLRDLGKINPSLKKELNKDIRNILKPMLSEINQSIPSSPPLSGMAHNGRTGWPNRKNAVIKIDTRKPRRGLNGPSTKTAVNIVRIVTKGAPVAIVDMAGKAGGTTSRREPKYQRPTFARSLPGDPSRFMWKNAEKTIASVEREMNDTIKAVVFRANQELMKVKI