Scaffold Ga0207934_1001864

Overview

Basic Information

• Taxon OID: 3300020561
• Scaffold ID: Ga0207934_1001864
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3127
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019088	Metagenome	231	Y
F060845	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207934_10018643	F019088	N/A	MIEEIKLNGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNEGHKLEMRVIVFCPTIMSVANPIYDTLKYLDEEDIIMDYSDNKLLDKLDEIEKEKEEIENFKKYVEVWKKFVKIDENINLLLPDELLILSKYDFRDPKDIPHPPFKYPRVNFLVFDDLVGDPHAFKKSHSAINNLCIKHRHLQCNLLFTTQYIKAIPPVLRRNLDIFVIFKFANVQSVVEQIYPEISGVIKEEDFEIIFEYATINKHDALIIDQTSKHIFKLNWDTALILN
Ga0207934_10018646	F060845	N/A	ETIPEQFNGVLRAWNNQNDVLGGLYPGCASLAHFQSQFYAHILSLNVTNEHDMYTVSGLNCSATPMSIAWEVTGTSAEPANIDAQATSNGNIWKTSNTNATPIMIACYTSRLEISAGRQILTFT