NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1008037

Scaffold Ga0208852_1008037


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1008037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F010898Metagenome297Y
F023523Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10080371F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDENAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGQEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLQDKMEELKHDLDHAKEYKLYKSVYKKFKECKDIDELNDDEMKLLYKFNFVKVQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATEE
Ga0208852_10080373F004816N/AMKFIKYKQVARITFNGFNDLYSDNASSVYTEPLNSEYFRNNLNAGVQVGNNSKRMRFQIKGLDNVKLSEHARFCMESINVPLLYDNVDDRKSLAQTIVRMSNLSSINCFDTHGNGQTDPVIFTGQTQTSQQRLGTTTTNRIYQNYELSQIFYNPYPEILYNFPISSNFLNNRYFDFTLIMQFIPGVQNYSINLIDDQKYFDMFHISFIVYDLDEEELLLTSTQDVDFKKVGETLPRKINNIR
Ga0208852_10080374F010898N/AMDKINIYINSKNRKENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIDGFNNMFQIVIYDVNDIITSIFEYRLQDGNPNVNDVRTNLNNLLLNKVVVSYDKIKNKFIYKRTLPITTNNFK
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